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中国精品科技期刊2020
刘珊,蒋杨丹,颜佶沙,等. 蜡样芽孢杆菌GW-01全基因组测序及生物学特性分析[J]. 食品工业科技,2024,45(7):167−176. doi: 10.13386/j.issn1002-0306.2023060031.
引用本文: 刘珊,蒋杨丹,颜佶沙,等. 蜡样芽孢杆菌GW-01全基因组测序及生物学特性分析[J]. 食品工业科技,2024,45(7):167−176. doi: 10.13386/j.issn1002-0306.2023060031.
LIU Shan, JIANG Yangdan, YAN Jisha, et al. Whole Genome Sequencing and Biological Characterization of Bacillus cereus GW-01[J]. Science and Technology of Food Industry, 2024, 45(7): 167−176. (in Chinese with English abstract). doi: 10.13386/j.issn1002-0306.2023060031.
Citation: LIU Shan, JIANG Yangdan, YAN Jisha, et al. Whole Genome Sequencing and Biological Characterization of Bacillus cereus GW-01[J]. Science and Technology of Food Industry, 2024, 45(7): 167−176. (in Chinese with English abstract). doi: 10.13386/j.issn1002-0306.2023060031.

蜡样芽孢杆菌GW-01全基因组测序及生物学特性分析

Whole Genome Sequencing and Biological Characterization of Bacillus cereus GW-01

  • 摘要: 目的:通过全基因组测序和生物信息学,研究前期筛选可降解高效氯氰菊酯(β-CY)蜡样芽孢杆菌GW-01的基因组序列信息和生物学特性,为其安全性评估提供参考。方法:利用HPLC验证了GW-01降解β-CY的能力。GW-01的整个基因组基于二代Illumina NovaSeq与三代PacBio Sequel测序平台相结合的测序技术,对菌株GW-01进行全基因组测序,并对测序数据进行基因组组装、基因预测与功能注释、碳水化合物活性酶预测、毒力因子和抗生素抗性分析,此外,还基于gyrA 基因序列对菌株GW-01构建系统发育树。结果:GW-01在第6 d可降解48.4%的β-CY;GW-01菌株全基因组大小为5244145 bp,基因组类型为环状,平均GC含量36.43%,共编码5314个基因,含有104个tRNA基因,313个ncRNA,GW-01菌株全基因组序列在GO、KEGG、COG、NR和 Swiss-Prot、CAZy、VFDB、CARD数据库分别注释到基因3536、4714、4434、5290、3854、135、263和96个,GW-01与其他四个近缘菌株相比显示出高GC含量,并且毒力因子和耐药基因较少。结论:GW-01与其近缘菌相比,显示出明显不同的进化途径和毒素编码基因,表明其安全性较高。

     

    Abstract: Objective: To analyze the genome sequence information and biological properties of the pre-screened high-performance cypermethrin (β-CY)-degrading Bacillus cereus strain GW-01 through whole genome sequencing and bioinformatics, and to provide valuable insights for its safety assessment. Methods: The degradation ability of GW-01 towards β-CY was verified using HPLC. The whole genome of strain GW-01 was sequenced using third-generation single-molecule sequencing technology based on the second-generation Illumina NovaSeq and third-generation PacBio Sequel sequencing platforms. The sequencing data underwent analyses for genome assembly, gene prediction, functional annotation, prediction of carbohydrate-activating enzymes, virulence factors, and antibiotic resistance. Additionally, a phylogenetic tree was constructed for strain GW-01 based on the gyrA gene sequence. Results: On day 6, GW-01 degraded 48.4% of β-CY. The whole genome size of GW-01 strain was 5244145 bp with a cyclic genome type and an average GC content of 36.43%. It encoded a total of 5314 genes, including 104 tRNA genes and 313 ncRNAs. The whole genome sequences of GW-01 were annotated in the GO, KEGG, COG, NR, Swiss-Prot, CAZy, VFDB, and CARD databases, yielding 3536, 4714, 4434, 5290, 3854, 135, 263 and 96 annotated genes, respectively. GW-01 exhibited higher GC content and fewer virulence factors and resistance genes compared to the other four closely related strains. Conclusion: GW-01 displayed a distinct evolutionary pathway and a lower number of toxin-encoding genes compared to common Bacillus cereus strains, suggesting its higher safety profile.

     

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