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中国精品科技期刊2020
丁淑金,杨彦萍,邓茹友,等. 葡萄汁酵母NOT5基因生物信息学分析[J]. 食品工业科技,2022,43(18):145−151. doi: 10.13386/j.issn1002-0306.2021120309.
引用本文: 丁淑金,杨彦萍,邓茹友,等. 葡萄汁酵母NOT5基因生物信息学分析[J]. 食品工业科技,2022,43(18):145−151. doi: 10.13386/j.issn1002-0306.2021120309.
DING Shujin, YANG Yanping, DENG Ruyou, et al. Bioinformatics Analysis of the NOT5 Gene in Saccharomyces uvarum[J]. Science and Technology of Food Industry, 2022, 43(18): 145−151. (in Chinese with English abstract). doi: 10.13386/j.issn1002-0306.2021120309.
Citation: DING Shujin, YANG Yanping, DENG Ruyou, et al. Bioinformatics Analysis of the NOT5 Gene in Saccharomyces uvarum[J]. Science and Technology of Food Industry, 2022, 43(18): 145−151. (in Chinese with English abstract). doi: 10.13386/j.issn1002-0306.2021120309.

葡萄汁酵母NOT5基因生物信息学分析

Bioinformatics Analysis of the NOT5 Gene in Saccharomyces uvarum

  • 摘要: 目的:从转录组分析数据中得到葡萄汁酵母NOT5基因,并对其进行生物学信息分析,为后期研究该基因的作用打下基础。方法:使用在线分析工具COILS Server、SOPMA、Alpha Fold 等分析预测NOT5基因编码蛋白质的一级结构、二级结构、三级结构及其结构域。结果:葡萄汁酵母NOT5基因核苷酸序列的开放阅读框为1446 bp,可编码481个氨基酸,位于XVI染色体690107~691789,在系统发育树中与真贝酵母(Saccharomyces eubayanus NOT5 like protein XP018219088.1)NOT5基因的亲缘关系最近;其编码的蛋白质是不稳定的亲水蛋白,分子式为C2493H3848N654O795S19,分子质量为56311.02,不含信号肽,无跨膜区域,存在卷曲螺旋区域,亚细胞定位于细胞质中的线粒体上;蛋白质的二级结构以随机卷曲为主;预测存在Pfam Not3和Pfam NOT2_3_5结构域;以Yeast Not1-Not2-Not5 (4by6.1.C)为模板构建NOT5蛋白的三级结构,两者的序列一致性可以达到89.88%。结论:葡萄汁酵母NOT5基因编码的蛋白结构不稳定,可能在细胞中互连翻译和转录。

     

    Abstract: Objective: In this paper, we obtained the NOT5 gene from Saccharomyces uvarum by transcriptome analysis. Analysis of its biological information can lay the foundation for the later study of the role of the gene. Methods: The primary structure, secondary structure, tertiary structure, and structural domains of the encoded protein were predicted using online analysis tools such as COILS Server, SOPMA, and Alpha Fold. Results: The length of the NOT5 gene was 1446 bp, encoding 481 amino acids, and it was located on chromosome XVI 690107~691789. The genetic relationship analysis showed that this gene was the closest to Saccharomyces eubayanus NOT5 like protein XP018219088.1, and had high homology. Its molecular formula was C2493H3848N654O795S19, and its molecular mass was 56311.02. It was an unstable hydrophilic protein. The protein encoded by this gene did not contain a signal peptide, had no transmembrane region, had a coiled helix region, and was subcellularly localized on the mitochondria in the cytoplasm. The secondary structure of the protein was dominated by random coils. Pfam Not3 and Pfam NOT2_3_5 domains were predicted. Yeast Not1-Not2-Not5 (4by6.1.C) was used as the template to construct the tertiary structure of NOT5 protein, and the sequence consistency between the two could reach 89.88%. Conclusion: The structure of the protein encoded by the NOT5 gene was unstable, and would interconnect translation and transcription in the cell.

     

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