板栗过氧化氢酶基因CAT1的克隆及生物信息学分析
Cloning and bioinformatics analysis of catalase gene (CAT1) from Castanea mollissima blume
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摘要: 为研究板栗过氧化氢酶基因CAT1的功能,旨在为其采后贮藏中品质变化研究提供分子机理基础。以板栗为试材,提取总RNA,通过c DNA末端快速扩增技术(RACE),克隆到板栗CAT1基因c DNA全长,并对其进行生物信息学分析。结果表明,该基因序列全长1485 bp,包含一个1479 bp的开放阅读框,编码492个氨基酸。氨基酸序列分析表明,板栗CAT1与枣(Ziziphus jujuba)、烟草(Nicotiana tabacum)、陆地棉(Gossypium hirsutum)等植物过氧化氢酶CAT1氨基酸序列有较高的相似性。蛋白分析表明,该蛋白分子量为56947.31 Da,理论等电点6.65,属稳定性亲水蛋白;亚细胞定位于过氧化氢酶体,存在30个磷酸化位点,无信号肽。二级结构以α螺旋、无规则卷曲为主。保守结构域预测表明,该基因编码蛋白属于Catalase-like超家族。本研究克隆获得了板栗CAT1基因,为进一步研究该基因的生物学功能奠定了基础。Abstract: The objectives of the present study were to provide a molecular mechanism basis in the studying of quality changes in postharvest and storage from Castanea mollissima blume, and further exploring the function of CAT1 gene. Full-length CAT1 c DNA was cloned from Castanea mollissima blume using rapid amplication of c DNA ends ( RACE) method, and were analyzed by bioinformatics technology.The results of sequence analysis indicated that CAT1 had a length of 1485 bp containing a 1479 bp open reading frame which encoded 492 amino acid residues. Amino acid sequence analysis indicated that, CAT1 was high identity with the catalases of Ziziphus jujuba, Nicotiana tabacum, Gossypium hirsutum and many other plants. The predicted molecular weight of the protein was 56947.31 Da with the p I of 6.65.Characteristic analysis of protein results revealed that CAT1 protein is a stable, non-transmenbrane and hydrophilic protein, located in microbody ( peroxisome) .It has no signal peptide and contains 30 phosphorylation sites. The conserved domains service analysis indicated that CAT1 belonged to catalase-like superfamily.The secondary structure prediction showed that Castanea mollissima blume CAT1 protein mainly contains α-helix and random coil.Castanea mollissima blume CAT1 gene were cloned in this study, which laid the foundation for further studying biological of the gene.