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中国精品科技期刊2020
徐丽萍, 姜喆, 葛英亮, 王鑫, 倪燕. 利用Illumina高通量测序技术筛选低温降解玉米秸秆真菌[J]. 食品工业科技, 2020, 41(20): 99-103. DOI: 10.13386/j.issn1002-0306.2020.20.016
引用本文: 徐丽萍, 姜喆, 葛英亮, 王鑫, 倪燕. 利用Illumina高通量测序技术筛选低温降解玉米秸秆真菌[J]. 食品工业科技, 2020, 41(20): 99-103. DOI: 10.13386/j.issn1002-0306.2020.20.016
XU Li-ping, JIANG Zhe, GE Ying-liang, WANG Xin, NI Yan. Screening of Low-temperature Degrading Corn Stalk Fungi by Illumina High-throughput Sequencing Technology[J]. Science and Technology of Food Industry, 2020, 41(20): 99-103. DOI: 10.13386/j.issn1002-0306.2020.20.016
Citation: XU Li-ping, JIANG Zhe, GE Ying-liang, WANG Xin, NI Yan. Screening of Low-temperature Degrading Corn Stalk Fungi by Illumina High-throughput Sequencing Technology[J]. Science and Technology of Food Industry, 2020, 41(20): 99-103. DOI: 10.13386/j.issn1002-0306.2020.20.016

利用Illumina高通量测序技术筛选低温降解玉米秸秆真菌

Screening of Low-temperature Degrading Corn Stalk Fungi by Illumina High-throughput Sequencing Technology

  • 摘要: 玉米秸秆及根际土壤中纤维素降解菌资源丰富,本研究旨在分析其真菌群落结构及低温纤维素降解真菌的筛选。采集玉米秸秆及根际土壤,利用高通量测序方法对其中的真菌群落结构进行生物信息学分析,以羧甲基纤维素钠为唯一碳源,筛选低温纤维素降解真菌并通过ITS测序进行菌种鉴定。结果表明,对玉米秸秆及秸秆根部土壤测序共获得20715913 bp,共拼接成82250个基因片段,平均长度为249.29 bp,其中共发现5个真菌门,确定共有的优势菌属为Guehomyce;通过在15 ℃低温筛选、比较0、5、10、15 ℃低温下经刚果红染色产生的透明圈与菌落直径的比值得到3株产酶能力较强的纤维素降解真菌,分别为FB1、FB7、FB8。结合液态发酵测定其降解率分别是27.66%、21.53%、23.01%,最终确定菌株FB1分泌纤维素酶效果最好、降解效果最佳,经鉴定后确认为假枝孢菌(Cladosporium pseudocladosporioides)。

     

    Abstract: There are abundant cellulose degrading bacteria in corn straw and rhizosphere soil. The purpose of this study was to analyze the fungal community structure and the screening of low temperature degrading fungi. Corn straw and rhizosphere soil were collected. The community structure of fungi in corn straw and rhizosphere soil were analyzed by high-throughput sequencing. Carboxymethyl cellulose sodium was used as the sole carbon source to screen low-temperature cellulose degrading fungi and identified them by its sequencing. The results showed that 20715913 BP was obtained from the sequencing of corn straw and its root soil,and 82250 gene fragments were spliced,with an average length of 249.29 bp. There were five fungal portal were found,and the dominant genus was identified as Guehomyce. Through screening at 15 ℃,comparing the ratio of transparent circle produced by Congo red staining to colony diameter at 0,5,10 and 15 ℃,three cellulose degrading fungi with strong enzyme producing ability were FB1,FB7 and FB8. The degradation rate was 27.66%,21.53% and 23.01% respectively. Finally,it was determined that FB1 had the best cellulase secretion and degradation effect,and it was identified as Cladosporium pseudocladosporioides.

     

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